Top Senior Level Biotech Software Engineer Jobs in San Francisco, CA

As a Software Engineer, you'll build AI-driven product experiences for scientists, optimize user onboarding, and analyze data to drive growth and retention.

As a Software Engineer, you will design and build critical systems for enterprise customers, ensuring regulatory compliance and enhancing product capabilities. Your role involves technical leadership, architectural work, and mentoring team members, with a focus on scalable and reliable software solutions.

The role requires engineering integrative solutions between AI and lab systems to enhance molecule discovery through automation and data connectivity. It involves prototyping, collaboration with scientists, deploying intelligent systems, and ensuring reliable lab operations.

As a Senior Mass Spectrometry Software Scientist, you will develop mass spectrometry data analysis solutions and guide client projects to improve biopharmaceutical R&D workflows.

The Software Engineering Manager leads a team to design and maintain data processing systems and computational pipelines, collaborating across teams to support scientific research.

Develop, maintain, and productionize reproducible, scalable analytical workflows and tools for bulk and single-cell transcriptomic and epigenetic data. Collaborate with computational scientists to convert analyses into reusable components, integrate multimodal data formats, and provide interfaces for scientists and downstream systems.

As a Senior Data Engineer, you will design and develop AI-powered data solutions, investigate tools, and collaborate with engineering to enhance Sleuth's platform.

As a Senior Software Engineer, you will design and maintain data infrastructure for protein engineering, ensuring secure data pipelines and compliance, while collaborating with multi-disciplinary teams.

Lead Research Informatics strategy and teams while remaining a principal-engineer contributor. Design, write, review, and maintain production software (30–50% hands-on) using C#, MVC, ASP.NET, and SQL; integrate vendor scientific informatics tools; ensure system reliability, data quality, and delivery across the drug discovery lifecycle.

The Senior Enterprise Integration Engineer will manage enterprise integrations for various business systems, ensuring secure, reliable data flow across the organization, and partner with internal teams to enhance automation and efficiency.

The Senior Software Engineer II at Freenome will design and develop reliable backend services, mentor junior engineers, and collaborate with cross-disciplinary teams in a remote setting.